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<TITLE>Biopool v2.0 Reference</TITLE>
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<H3> Object Representation:</H3>
<DL>
<DT>AminoAcidCode
<DD>
<DT>AtomCode
<DD>
<DT>Debug
<DD>
<DT>Identity
<DD>
</DL>

<H4>Base Classes:</H4>
<DL>
<DT>SimpleBond
<DD>
<DT>Bond
<DD>
</DL>

<H4>Physical Classes:</H4>
<DL>
<DT>Atom
<DD>
<DT>Group
<DD>
<DT>SideChain
<DD>
<DT>AminoAcid
<DD>
<DT>Spacer
</DL>


<H3>I/O Classes:</H3>
<DL>
<DT>IoTools
<DD> Miscellanous tools for I/O operations.
</DL>

<H4>Loader:</H4>
<DL>
<DT>Loader
<DD>Base class for all loaders.
<DT>IntLoader
<DD> Loads the internal coordinates of objects.
<DT>SeqLoader
<DD> Loads the sequence of objects.
<DT>XyzLoader
<DD> Loads the carthesian coordinates of objects.
</DL>

<H4>Saver:</H4>
<DL>
<DT>Saver
<DD>Base class for all savers.
<DT>SeqSaver
<DD> Saves the sequence of objects.
<DT>XyzSaver
<DD> Saves the carthesian coordinates of objects.
</DL>

<H3>Test Programs:</H3>
<DL>
<DT>AtomTest
<DD> Tests Atom.
<DT>GroupTest
<DD> Tests Group.
<DT>AminoAcidTest
<DD> Tests AminoAcid.
</DL>

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